PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g015180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 543aa    MW: 60095.2 Da    PI: 6.0328
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g015180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding507.1e-164289148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +l+d+vk++G g+W+++ ++  + R++k+c++rw ++l
   Csa15g015180.1 42 KGPWTSTEDGILIDYVKKHGEGNWNAVQKHTSLARCGKSCRLRWANHL 89
                     79******************************************9986 PP

2Myb_DNA-binding52.31.3e-1695138146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E++l+v+++++lG++ W+  a++++ gRt++++k++w++
   Csa15g015180.1  95 KGAFSEDEEQLIVELHAKLGNK-WAQMAEHLP-GRTDNEIKNYWNT 138
                      799*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0016936.6E-2781542IPR016310Transcription factor, GAMYB
PROSITE profilePS5129414.6843789IPR017930Myb domain
SuperFamilySSF466893.71E-2940136IPR009057Homeodomain-like
SMARTSM007171.4E-114191IPR001005SANT/Myb domain
PfamPF002495.3E-144289IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-234396IPR009057Homeodomain-like
CDDcd001677.38E-104489No hitNo description
PROSITE profilePS5129426.20590144IPR017930Myb domain
SMARTSM007171.5E-1694142IPR001005SANT/Myb domain
PfamPF002491.4E-1595138IPR001005SANT/Myb domain
CDDcd001675.24E-1297138No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2497143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MSYLTTVESD DGMHSSIYNE SSAADSISNG YRSRGRGGAL KKGPWTSTED GILIDYVKKH  60
GEGNWNAVQK HTSLARCGKS CRLRWANHLR PNLKKGAFSE DEEQLIVELH AKLGNKWAQM  120
AEHLPGRTDN EIKNYWNTRI KRRQRAGLPL YPPEIHVEDL QWSEEDTKSN IIRVDRRRRQ  180
DFLQFGNSKA NLLFDNLSFA ASLLPAASDI SDLVACNMLG TGASSSWYES YMPPILPSPK  240
QVWESGSRFP MCSSNIKHEV QSPEYFQNTA SQKNPRSCSI SPCYVDHPPY GNQHSSDMMM  300
ILDSHTLTDG MLPTSKPSFG AVKLELPSFQ YSETSAFDQW KTTPSPPHSD LLDSVDAYIQ  360
SPPPSQIEES DCFSSCDTGL LDMLLHEAKI KTSAKHSLLS SSPEKSFCST TCTTDATQNI  420
PRSQIKSGEL EDSQKNLARS EISIPTQLTA GNFVKTEELD QVWEPKRVDM TRPDVLLASS  480
WLDQGCYGIV RDTSSMSDAL ALLLGGDDIG NSYVTVGSSS GQAPRGGVRS CGWTNMPPVW  540
SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32401435107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00348DAPTransfer from AT3G11440Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195850.0AY519585.1 Arabidopsis thaliana MYB transcription factor (At3g11440) mRNA, complete cds.
GenBankBT0039400.0BT003940.1 Arabidopsis thaliana clone RAFL15-06-P04 (R20731) putative Myb DNA-binding protein (At3g11440) mRNA, complete cds.
GenBankBT0051200.0BT005120.1 Arabidopsis thaliana clone U20731 putative Myb DNA-binding protein (At3g11440) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464847.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLR0G4540.0R0G454_9BRAS; Transcription factor
STRINGfgenesh2_kg.3__1182__AT3G11440.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38022859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.10.0myb domain protein 65